In silico analysis of Simple Sequence Repeats from chloroplast genomes of Solanaceae species
نویسندگان
چکیده
منابع مشابه
In silico analysis of simple sequence repeats (SSRs) in chloroplast genomes of Glycine species
Microsatellites, also known as simple sequence repeats, are short (1-6 bp long) repetitive DNA sequences present in chloroplast genomes (cpDNAs). In this work, chloroplast genomes of eight species (Glycine canescens, G. cyrtoloba, G. dolichocarpa, G. falcata, G. max, G. soja, G. stenophita, and G. tomentella) from Glycine genus were screened for cpSSRs by utilisation of MISA perl script with a ...
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The compilation of simple sequence repeats (SSRs) in viruses and its analysis with reference to incidence, distribution and variation would be instrumental in understanding the functional and evolutionary aspects of repeat sequences. Present study encompasses the analysis of SSRs across 30 species of alphaviruses. The full length genome sequences, assessed from NCBI were used for extraction and...
متن کاملSimple sequence repeats in prokaryotic genomes.
Simple sequence repeats (SSRs) in DNA sequences are composed of tandem iterations of short oligonucleotides and may have functional and/or structural properties that distinguish them from general DNA sequences. They are variable in length because of slip-strand mutations and may also affect local structure of the DNA molecule or the encoded proteins. Long SSRs (LSSRs) are common in eukaryotes b...
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The use of simple sequence repeats or microsatellites as genetic markers has become very popular because of their abundance and length variation between different individuals. SSRs are tandem repeat units of 1 to 6 base pairs that are found abundantly in many prokaryotic and eukaryotic genomes. This is the first study examining and comparing SSRs in completely sequenced fungal genomes. We analy...
متن کاملIdentification and characterization of simple sequence repeats in the genomes of Shigella species.
A variety of simple sequence repeats (SSRs) have been identified in the genome of Shigella flexneri serotype 2a (strain Sf301), an enteric pathogen that causes bacillary dysentery in man. The distribution of SSRs, with unit length ranging from 1 to 9 nucleotides, was biased in different regions of the genome. The tri-, tetra- and hexanucleotide SSRs prevailed in the coding regions while the mon...
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ژورنال
عنوان ژورنال: Cropp Breeding and Applied Biotechnology
سال: 2009
ISSN: 1984-7033
DOI: 10.12702/1984-7033.v09n04a09